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Author SHA1 Message Date
Timothy Kassis 71add64426 Remove planning with files skill becasue it is specific to Claude Code 2026-03-25 14:40:17 -07:00
Timothy Kassis d9b2503391 Make writing skills more explicit 2026-03-25 11:54:41 -07:00
Timothy Kassis 04a7be2319 Add Security Disclaimer section to README 
Introduced a new section outlining the security implications of using agent skills, emphasizing the importance of reviewing skills before installation. Included recommendations for safe usage and a reminder of the review process for contributions.
 2026-03-25 09:31:25 -07:00
Timothy Kassis cb364cc3d8 Bump version 2026-03-23 16:27:05 -07:00
Timothy Kassis f93d13b08e Improve token discovery for Modal 2026-03-23 16:26:43 -07:00
Timothy Kassis b75f4e8d08 Update Modal skill 2026-03-23 16:21:31 -07:00
Timothy Kassis 71e26ffa6d Add planning with files skill from @OthmanAdi 2026-03-23 14:34:03 -07:00
Timothy Kassis 4b90d0ca5b Merge pull request #100 from mwiewior/polars-bio 
feat: Add polars-bio skill for genomic interval operations and bioinformati…
 2026-03-18 12:19:58 -07:00
Timothy Kassis 575f1e586f Merge pull request #91 from alif-munim/main 
feat: Add arXiv database search skill
 2026-03-11 09:59:08 -07:00
Timothy Kassis 81589710a5 Merge pull request #87 from Cervolve/feat/primekg-skill 
feat: add PrimeKG Precision Medicine Knowledge Graph skill
 2026-03-09 10:46:16 -07:00
Timothy Kassis c84622c08a Merge pull request #70 from urabbani/feature/geomaster-skill 
Add GeoMaster: Comprehensive Geospatial Science Skill
 2026-03-06 14:39:13 -08:00
Timothy Kassis 3ff22d0c3a Merge branch 'main' into feature/geomaster-skill 2026-03-06 14:39:04 -08:00
Timothy Kassis 20e1be89f3 Merge pull request #80 from fedorov/update-idc-1.4.0 
Update imaging-data-commons skill to v1.4.0
 2026-03-05 14:06:03 -08:00
Timothy Kassis fc60a11f85 Merge pull request #78 from small-thinking/feat/support-gemini-cli 
docs: add support and installation guide for Gemini CLI
 2026-03-04 09:28:11 -08:00
Timothy Kassis d452499891 Merge pull request #68 from salmanmkc/upgrade-github-actions-node24 
Upgrade GitHub Actions for Node 24 compatibility
 2026-03-03 07:55:04 -08:00
Timothy Kassis 24ee2e3c49 Merge pull request #69 from salmanmkc/upgrade-github-actions-node24-general 
Upgrade GitHub Actions to latest versions
 2026-03-03 07:54:36 -08:00
Timothy Kassis 5dfb909509 Merge pull request #72 from ashrafkahoush-ux/feat/cognitive-science-skills 
Add dhdna-profiler and what-if-oracle as cognitive science skills
 2026-03-03 07:53:43 -08:00
Timothy Kassis a4eabbb519 Merge pull request #75 from kuanlinhuang/main 
Add 12 new scientific skills
 2026-03-03 07:52:27 -08:00
Timothy Kassis 5642c61b33 Merge pull request #66 from K-Dense-AI/add-parallel 
Add parallel-web skill and update research-lookup
 2026-03-03 07:47:29 -08:00
Timothy Kassis b0923b2e06 Merge pull request #67 from 04cb/fix/docs-pymatgen-computedentry-energy 
Fix docs: correct ComputedEntry energy parameter description
 2026-03-01 18:00:44 -08:00
Timothy Kassis 0cec94a92a Merge pull request #65 from urabbani/feature/geomaster-skill 
Add GeoMaster: Comprehensive Geospatial Science Skill
 2026-03-01 18:00:30 -08:00
Timothy Kassis d4177ce3a5 Merge pull request #61 from connerlambden/add-bgpt-skill 
Add BGPT paper search skill
 2026-02-24 14:23:19 -08:00
Timothy Kassis 29ae12d2c0 Merge pull request #62 from leipzig/feature/add-tiledb-vcf-skill 
Feature/add tiledb-vcf skill
 2026-02-24 12:43:57 -08:00
Timothy Kassis 77883baba2 Merge pull request #60 from renato-umeton/main 
Fix architecture diagram
 2026-02-24 12:41:32 -08:00
Timothy Kassis 9bc98cabe8 Merge pull request #58 from K-Dense-AI/fix-yaml-frontmatter 
Fix allowed-tools YAML frontmatter format across all skills
 2026-02-23 13:45:04 -08:00
Timothy Kassis 8bbf1fc840 Merge pull request #53 from borealBytes/feat/timesfm-forecasting-skill 
feat(ml): add timesfm-forecasting skill for local time series forecasting
 2026-02-23 09:43:01 -08:00
Timothy Kassis 6df504f03c Merge pull request #57 from renato-umeton/claude/implement-issue-56-tdd-SOjek 
Add open-notebook skill with comprehensive API documentation
 2026-02-23 09:42:19 -08:00
Timothy Kassis f7585b7624 Merge pull request #50 from borealBytes/feat/markdown-mermaid-writing-skill 
feat(scientific-communication): add markdown-mermaid-writing skill
 2026-02-21 20:49:19 -08:00
Timothy Kassis 326b043b8f Merge pull request #46 from fedorov/update-idc-v1.3.0 
update imaging-data-commons skill to v1.3.1
 2026-02-16 10:24:23 -08:00
Timothy Kassis d80ddf17c9 Merge pull request #41 from K-Dense-AI/update-writing-skills 
Sync writing skills from claude-scientific-writer
 2026-02-05 08:52:18 -08:00
Timothy Kassis 7f9a689126 Merge pull request #42 from fedorov/update-idc-skill-to-v1.2.0 
Update imaging-data-commons skill to v1.2.0
 2026-02-05 08:51:06 -08:00
Timothy Kassis 49024095e3 Merge pull request #37 from jiaodu1307/fix/rdkit-morgan-fp 
fix(rdkit): update fingerprint generation to use rdFingerprintGenerator API
 2026-02-01 18:46:35 -08:00
Timothy Kassis a31cf4dd97 Merge pull request #35 from fedorov/add-idc-clean 
Added Imaging Data Commons skill
 2026-01-25 10:17:32 -08:00
Timothy Kassis 497232fbc1 Merge pull request #32 from K-Dense-AI/add-open-source-acknowledgements 
Add open source acknowledgements
 2026-01-15 20:44:16 -08:00
Timothy Kassis f086d9f499 Merge pull request #31 from shao-shuai/fix/uspto-database 
Add patentsview api key for patent search api
 2026-01-09 08:57:21 -08:00
Timothy Kassis a7221bb237 Merge pull request #30 from marovole/fix/shell-command-injection-docs 
fix(security): Replace shell=True with safe subprocess patterns in documentation
 2026-01-08 08:53:35 -08:00
Timothy Kassis 38c1560c7b Merge pull request #29 from K-Dense-AI/orion/add-k-dense-web-gif 
Add K-Dense Web GIF to README
 2026-01-07 20:38:47 -08:00
Timothy Kassis 29536568d4 Merge pull request #28 from Jacobluke-/patch-1 
Fix typo in gget/SKILL.md description
 2026-01-07 08:56:08 -08:00
Timothy Kassis 9ab5b29dc5 Merge pull request #26 from K-Dense-AI/fix-writing-skills 
Fix pptx-posters SKILL.md with correct content
 2026-01-05 15:47:03 -08:00
Timothy Kassis 90aea1b0a5 Merge branch 'main' into fix-writing-skills 2026-01-05 15:46:55 -08:00
Timothy Kassis 1d716b0375 Merge pull request #25 from K-Dense-AI/fix-writing-skills 
Merge skills from claude-scientific-writer
 2026-01-05 13:31:55 -08:00
Timothy Kassis d243a12564 Merge pull request #24 from backtrue/feature/add-nstc-support 
feat(research-grants): Add comprehensive Taiwan NSTC proposal support
 2026-01-05 12:38:29 -08:00
Timothy Kassis 4fc6ac7727 Merge pull request #18 from robotlearning123/feature/neuropixels-analysis 
Add neuropixels-analysis skill for extracellular electrophysiology
 2025-12-18 11:31:11 -08:00
Timothy Kassis 4fb9c053f7 Merge pull request #16 from K-Dense-AI/fix-skills 
Update writer skills with latest versions
 2025-12-12 13:58:21 -08:00
Timothy Kassis a643493a32 Merge pull request #15 from K-Dense-AI/add-writer-skills 
Added all updated deep research and writing skills
 2025-12-12 09:19:38 -08:00
Timothy Kassis ec10daba7e Merge pull request #12 from jxtse/add-brenda-database-skill 
Add BRENDA database skill for enzyme research and analysis
 2025-12-02 20:47:18 -08:00
Timothy Kassis 8d82c83a1a Merge pull request #11 from aledlie/main 
refactor: replace manual argv parsing with argparse
 2025-11-30 08:52:18 -05:00
Timothy Kassis 02574ba19d Merge pull request #10 from K-Dense-AI/add_adaptyv_integration 
Add support for Adaptyv for protein design
 2025-11-24 19:53:28 -05:00
Timothy Kassis 8e7a791871 Merge pull request #8 from alperyilmaz/patch-1 
updated CHEMBL function calls
 2025-11-23 04:54:15 -08:00
Timothy Kassis 19c0b390ee Merge pull request #5 from K-Dense-AI/refactor_skills 
Refactor skills into a single installable plugin
 2025-11-13 19:21:02 -08:00